How To Install r-bioc-edaseq on Kali Linux

In this tutorial we learn how to install r-bioc-edaseq on Kali Linux. r-bioc-edaseq is GNU R exploratory data analysis and normalization for RNA-Seq

Introduction

In this tutorial we learn how to install r-bioc-edaseq on Kali Linux.

What is `r-bioc-edaseq`

r-bioc-edaseq is:

Numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).

There are three methods to install r-bioc-edaseq on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-edaseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-edaseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-edaseq

Install r-bioc-edaseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-edaseq using apt by running the following command:

sudo apt -y install r-bioc-edaseq

Install r-bioc-edaseq Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-edaseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-edaseq

How To Uninstall r-bioc-edaseq on Kali Linux

To uninstall only the r-bioc-edaseq package we can use the following command:

sudo apt-get remove r-bioc-edaseq

Uninstall r-bioc-edaseq And Its Dependencies

To uninstall r-bioc-edaseq and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-edaseq

Remove r-bioc-edaseq Configurations and Data

To remove r-bioc-edaseq configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-edaseq

Remove r-bioc-edaseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-edaseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-edaseq

Dependencies

r-bioc-edaseq have the following dependencies:

References

r-bioc-edaseq website

Summary

In this tutorial we learn how to install r-bioc-edaseq package on Kali Linux using different package management tools: apt, apt-get and aptitude.