How To Install r-bioc-ebseq on Kali Linux

In this tutorial we learn how to install r-bioc-ebseq on Kali Linux. r-bioc-ebseq is R package for RNA-Seq Differential Expression Analysis

Introduction

In this tutorial we learn how to install r-bioc-ebseq on Kali Linux.

What is r-bioc-ebseq

r-bioc-ebseq is:

r-bioc-ebseq is an R package for identifying genes and isoforms differentially expressed (DE) across two or more biological conditions in an RNA-seq experiment.

There are three methods to install r-bioc-ebseq on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-ebseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-ebseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-ebseq

Install r-bioc-ebseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-ebseq using apt by running the following command:

sudo apt -y install r-bioc-ebseq

Install r-bioc-ebseq Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-ebseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-ebseq

How To Uninstall r-bioc-ebseq on Kali Linux

To uninstall only the r-bioc-ebseq package we can use the following command:

sudo apt-get remove r-bioc-ebseq

Uninstall r-bioc-ebseq And Its Dependencies

To uninstall r-bioc-ebseq and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-ebseq

Remove r-bioc-ebseq Configurations and Data

To remove r-bioc-ebseq configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-ebseq

Remove r-bioc-ebseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-ebseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-ebseq

Dependencies

r-bioc-ebseq have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-ebseq package on Kali Linux using different package management tools: apt, apt-get and aptitude.