How To Install r-bioc-dss on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-dss on Debian 12.
What is r-bioc-dss
r-bioc-dss is:
DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.
There are three methods to install r-bioc-dss on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-dss Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-dss using apt-get by running the following command:
sudo apt-get -y install r-bioc-dss
Install r-bioc-dss Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-dss using apt by running the following command:
sudo apt -y install r-bioc-dss
Install r-bioc-dss Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-dss using aptitude by running the following command:
sudo aptitude -y install r-bioc-dss
How To Uninstall r-bioc-dss on Debian 12
To uninstall only the r-bioc-dss package we can use the following command:
sudo apt-get remove r-bioc-dss
Uninstall r-bioc-dss And Its Dependencies
To uninstall r-bioc-dss and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-dss
Remove r-bioc-dss Configurations and Data
To remove r-bioc-dss configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-dss
Remove r-bioc-dss configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-dss configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-dss
Dependencies
r-bioc-dss have the following dependencies:
References
Summary
In this tutorial we learn how to install r-bioc-dss package on Debian 12 using different package management tools: apt, apt-get and aptitude.
