How To Install r-bioc-drimseq on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-drimseq on Debian 12.
What is r-bioc-drimseq
r-bioc-drimseq is:
Dirichlet-multinomial model in RNA-seq The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.
There are three methods to install r-bioc-drimseq on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-drimseq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-drimseq using apt-get by running the following command:
sudo apt-get -y install r-bioc-drimseq
Install r-bioc-drimseq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-drimseq using apt by running the following command:
sudo apt -y install r-bioc-drimseq
Install r-bioc-drimseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-drimseq using aptitude by running the following command:
sudo aptitude -y install r-bioc-drimseq
How To Uninstall r-bioc-drimseq on Debian 12
To uninstall only the r-bioc-drimseq package we can use the following command:
sudo apt-get remove r-bioc-drimseq
Uninstall r-bioc-drimseq And Its Dependencies
To uninstall r-bioc-drimseq and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-drimseq
Remove r-bioc-drimseq Configurations and Data
To remove r-bioc-drimseq configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-drimseq
Remove r-bioc-drimseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-drimseq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-drimseq
Dependencies
r-bioc-drimseq have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-mass
- r-bioc-genomicranges
- r-bioc-iranges
- r-bioc-s4vectors
- r-bioc-biocgenerics
- r-bioc-biocparallel
- r-bioc-limma
- r-bioc-edger
- r-cran-ggplot2
- r-cran-reshape2
References
Summary
In this tutorial we learn how to install r-bioc-drimseq package on Debian 12 using different package management tools: apt, apt-get and aptitude.
