How To Install r-bioc-dexseq on Debian 11

In this tutorial we learn how to install r-bioc-dexseq on Debian 11. r-bioc-dexseq is GNU R inference of differential exon usage in RNA-Seq

Introduction

In this tutorial we learn how to install r-bioc-dexseq on Debian 11.

What is `r-bioc-dexseq`

r-bioc-dexseq is:

The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.

There are three methods to install r-bioc-dexseq on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-dexseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-dexseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-dexseq

Install r-bioc-dexseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-dexseq using apt by running the following command:

sudo apt -y install r-bioc-dexseq

Install r-bioc-dexseq Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-dexseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-dexseq

How To Uninstall r-bioc-dexseq on Debian 11

To uninstall only the r-bioc-dexseq package we can use the following command:

sudo apt-get remove r-bioc-dexseq

Uninstall r-bioc-dexseq And Its Dependencies

To uninstall r-bioc-dexseq and its dependencies that are no longer needed by Debian 11, we can use the command below:

sudo apt-get -y autoremove r-bioc-dexseq

Remove r-bioc-dexseq Configurations and Data

To remove r-bioc-dexseq configuration and data from Debian 11 we can use the following command:

sudo apt-get -y purge r-bioc-dexseq

Remove r-bioc-dexseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-dexseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-dexseq

Dependencies

r-bioc-dexseq have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-dexseq package on Debian 11 using different package management tools: apt, apt-get and aptitude.