How To Install r-bioc-destiny on Debian 11
Introduction
In this tutorial we learn how to install r-bioc-destiny
on Debian 11.
What is r-bioc-destiny
r-bioc-destiny is:
This BioConductor package creates and plots diffusion maps.
There are three methods to install r-bioc-destiny
on Debian 11. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-destiny Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-destiny
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-destiny
Install r-bioc-destiny Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-destiny
using apt
by running the following command:
sudo apt -y install r-bioc-destiny
Install r-bioc-destiny Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-destiny
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-destiny
How To Uninstall r-bioc-destiny on Debian 11
To uninstall only the r-bioc-destiny
package we can use the following command:
sudo apt-get remove r-bioc-destiny
Uninstall r-bioc-destiny And Its Dependencies
To uninstall r-bioc-destiny
and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove r-bioc-destiny
Remove r-bioc-destiny Configurations and Data
To remove r-bioc-destiny
configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge r-bioc-destiny
Remove r-bioc-destiny configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-destiny
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-destiny
Dependencies
r-bioc-destiny have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-cran-matrix
- r-cran-rcpp
- r-cran-rcppeigen
- r-cran-rspectra
- r-cran-irlba
- r-bioc-pcamethods
- r-bioc-biobase
- r-bioc-biocgenerics
- r-bioc-summarizedexperiment
- r-bioc-singlecellexperiment
- r-cran-ggplot2
- r-cran-ggplot.multistats
- r-cran-tidyr
- r-cran-tidyselect
- r-cran-ggthemes
- r-cran-vim
- r-cran-knn.covertree
- r-cran-proxy
- r-cran-rcpphnsw
- r-cran-smoother
- r-cran-scales
- r-cran-scatterplot3d
- libc6
- libgcc-s1
- libstdc++6
References
Summary
In this tutorial we learn how to install r-bioc-destiny
package on Debian 11 using different package management tools: apt
, apt-get
and aptitude
.