How To Install r-bioc-deseq on Ubuntu 22.04
Introduction
In this tutorial we learn how to install r-bioc-deseq
on Ubuntu 22.04.
What is r-bioc-deseq
r-bioc-deseq is:
BioConductor package to estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.
There are three methods to install r-bioc-deseq
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-deseq Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-deseq
using apt-get
by running the following command:
sudo apt-get -y install r-bioc-deseq
Install r-bioc-deseq Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install r-bioc-deseq
using apt
by running the following command:
sudo apt -y install r-bioc-deseq
Install r-bioc-deseq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-deseq
using aptitude
by running the following command:
sudo aptitude -y install r-bioc-deseq
How To Uninstall r-bioc-deseq on Ubuntu 22.04
To uninstall only the r-bioc-deseq
package we can use the following command:
sudo apt-get remove r-bioc-deseq
Uninstall r-bioc-deseq And Its Dependencies
To uninstall r-bioc-deseq
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove r-bioc-deseq
Remove r-bioc-deseq Configurations and Data
To remove r-bioc-deseq
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge r-bioc-deseq
Remove r-bioc-deseq configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-deseq
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-deseq
References
Summary
In this tutorial we learn how to install r-bioc-deseq
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.