How To Install r-bioc-deseq on Debian 12

Learn how to install r-bioc-deseq on Debian 12 with this tutorial. r-bioc-deseq is GNU R differential gene expression analysis

Introduction

In this tutorial we learn how to install r-bioc-deseq on Debian 12.

What is `r-bioc-deseq`

r-bioc-deseq is:

BioConductor package to estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

There are three methods to install r-bioc-deseq on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-deseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-deseq using apt-get by running the following command:

sudo apt-get -y install r-bioc-deseq

Install r-bioc-deseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-deseq using apt by running the following command:

sudo apt -y install r-bioc-deseq

Install r-bioc-deseq Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-deseq using aptitude by running the following command:

sudo aptitude -y install r-bioc-deseq

How To Uninstall r-bioc-deseq on Debian 12

To uninstall only the r-bioc-deseq package we can use the following command:

sudo apt-get remove r-bioc-deseq

Uninstall r-bioc-deseq And Its Dependencies

To uninstall r-bioc-deseq and its dependencies that are no longer needed by Debian 12, we can use the command below:

sudo apt-get -y autoremove r-bioc-deseq

Remove r-bioc-deseq Configurations and Data

To remove r-bioc-deseq configuration and data from Debian 12 we can use the following command:

sudo apt-get -y purge r-bioc-deseq

Remove r-bioc-deseq configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-deseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-deseq

Dependencies

r-bioc-deseq have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-deseq package on Debian 12 using different package management tools: apt, apt-get and aptitude.