How To Install r-bioc-demixt on Kali Linux

In this tutorial we learn how to install r-bioc-demixt on Kali Linux. r-bioc-demixt is Cell type-specific deconvolution of heterogeneous tumor samples

Introduction

In this tutorial we learn how to install r-bioc-demixt on Kali Linux.

What is r-bioc-demixt

r-bioc-demixt is:

When studying cancer cells from tumors excised from patients, the samples will be a mixture of tumors and healthy cells, e.g. from invading immune cells. For comparing samples, the interest may be more on comparing the transcriptome of the tumors themselves.

This package prepares the statistical separation (deconvolution) of RNAseq or microarray generated expression data for two or three components.

There are three methods to install r-bioc-demixt on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-demixt Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-demixt using apt-get by running the following command:

sudo apt-get -y install r-bioc-demixt

Install r-bioc-demixt Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-demixt using apt by running the following command:

sudo apt -y install r-bioc-demixt

Install r-bioc-demixt Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-demixt using aptitude by running the following command:

sudo aptitude -y install r-bioc-demixt

How To Uninstall r-bioc-demixt on Kali Linux

To uninstall only the r-bioc-demixt package we can use the following command:

sudo apt-get remove r-bioc-demixt

Uninstall r-bioc-demixt And Its Dependencies

To uninstall r-bioc-demixt and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-demixt

Remove r-bioc-demixt Configurations and Data

To remove r-bioc-demixt configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-demixt

Remove r-bioc-demixt configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-demixt configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-demixt

Dependencies

r-bioc-demixt have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-demixt package on Kali Linux using different package management tools: apt, apt-get and aptitude.