How To Install r-bioc-degreport on Kali Linux

In this tutorial we learn how to install r-bioc-degreport on Kali Linux. r-bioc-degreport is BioConductor report of DEG analysis

Introduction

In this tutorial we learn how to install r-bioc-degreport on Kali Linux.

What is r-bioc-degreport

r-bioc-degreport is:

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

There are three methods to install r-bioc-degreport on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-degreport Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-degreport using apt-get by running the following command:

sudo apt-get -y install r-bioc-degreport

Install r-bioc-degreport Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-degreport using apt by running the following command:

sudo apt -y install r-bioc-degreport

Install r-bioc-degreport Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-degreport using aptitude by running the following command:

sudo aptitude -y install r-bioc-degreport

How To Uninstall r-bioc-degreport on Kali Linux

To uninstall only the r-bioc-degreport package we can use the following command:

sudo apt-get remove r-bioc-degreport

Uninstall r-bioc-degreport And Its Dependencies

To uninstall r-bioc-degreport and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-degreport

Remove r-bioc-degreport Configurations and Data

To remove r-bioc-degreport configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-degreport

Remove r-bioc-degreport configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-degreport configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-degreport

Dependencies

r-bioc-degreport have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-degreport package on Kali Linux using different package management tools: apt, apt-get and aptitude.