How To Install r-bioc-cummerbund on Kali Linux

In this tutorial we learn how to install r-bioc-cummerbund on Kali Linux. r-bioc-cummerbund is tool for analysis of Cufflinks RNA-Seq output

Introduction

In this tutorial we learn how to install r-bioc-cummerbund on Kali Linux.

What is r-bioc-cummerbund

r-bioc-cummerbund is:

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

There are three methods to install r-bioc-cummerbund on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-cummerbund Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-cummerbund using apt-get by running the following command:

sudo apt-get -y install r-bioc-cummerbund

Install r-bioc-cummerbund Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-cummerbund using apt by running the following command:

sudo apt -y install r-bioc-cummerbund

Install r-bioc-cummerbund Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-cummerbund using aptitude by running the following command:

sudo aptitude -y install r-bioc-cummerbund

How To Uninstall r-bioc-cummerbund on Kali Linux

To uninstall only the r-bioc-cummerbund package we can use the following command:

sudo apt-get remove r-bioc-cummerbund

Uninstall r-bioc-cummerbund And Its Dependencies

To uninstall r-bioc-cummerbund and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-cummerbund

Remove r-bioc-cummerbund Configurations and Data

To remove r-bioc-cummerbund configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-cummerbund

Remove r-bioc-cummerbund configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-cummerbund configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-cummerbund

Dependencies

r-bioc-cummerbund have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-cummerbund package on Kali Linux using different package management tools: apt, apt-get and aptitude.