How To Install r-bioc-cummerbund on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-cummerbund on Debian 12.
What is r-bioc-cummerbund
r-bioc-cummerbund is:
Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
There are three methods to install r-bioc-cummerbund on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-cummerbund Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-cummerbund using apt-get by running the following command:
sudo apt-get -y install r-bioc-cummerbund
Install r-bioc-cummerbund Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-cummerbund using apt by running the following command:
sudo apt -y install r-bioc-cummerbund
Install r-bioc-cummerbund Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-cummerbund using aptitude by running the following command:
sudo aptitude -y install r-bioc-cummerbund
How To Uninstall r-bioc-cummerbund on Debian 12
To uninstall only the r-bioc-cummerbund package we can use the following command:
sudo apt-get remove r-bioc-cummerbund
Uninstall r-bioc-cummerbund And Its Dependencies
To uninstall r-bioc-cummerbund and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-cummerbund
Remove r-bioc-cummerbund Configurations and Data
To remove r-bioc-cummerbund configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-cummerbund
Remove r-bioc-cummerbund configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-cummerbund configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-cummerbund
Dependencies
r-bioc-cummerbund have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics
- r-cran-rsqlite
- r-cran-ggplot2
- r-cran-reshape2
- r-cran-fastcluster
- r-bioc-rtracklayer
- r-bioc-gviz
- r-cran-plyr
- r-bioc-s4vectors
- r-bioc-biobase
References
Summary
In this tutorial we learn how to install r-bioc-cummerbund package on Debian 12 using different package management tools: apt, apt-get and aptitude.
