How To Install r-bioc-cner on Kali Linux
Introduction
In this tutorial we learn how to install r-bioc-cner on Kali Linux.
What is r-bioc-cner
r-bioc-cner is:
Large-scale identification and advanced visualization of sets of conserved noncoding elements.
There are three methods to install r-bioc-cner on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-cner Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-bioc-cner using apt-get by running the following command:
sudo apt-get -y install r-bioc-cnerInstall r-bioc-cner Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-bioc-cner using apt by running the following command:
sudo apt -y install r-bioc-cnerInstall r-bioc-cner Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-bioc-cner using aptitude by running the following command:
sudo aptitude -y install r-bioc-cnerHow To Uninstall r-bioc-cner on Kali Linux
To uninstall only the r-bioc-cner package we can use the following command:
sudo apt-get remove r-bioc-cnerUninstall r-bioc-cner And Its Dependencies
To uninstall r-bioc-cner and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-bioc-cnerRemove r-bioc-cner Configurations and Data
To remove r-bioc-cner configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-bioc-cnerRemove r-bioc-cner configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-cner configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-cnerDependencies
r-bioc-cner have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-biostrings
- r-cran-dbi
- r-cran-rsqlite
- r-bioc-genomeinfodb
- r-bioc-genomicranges
- r-bioc-rtracklayer
- r-bioc-xvector
- r-bioc-genomicalignments
- r-bioc-s4vectors
- r-bioc-iranges
- r-cran-readr
- r-bioc-biocgenerics
- r-cran-reshape2
- r-cran-ggplot2
- r-cran-powerlaw
- r-bioc-annotate
- r-bioc-go.db
- r-cran-r.utils
- r-bioc-keggrest
- libc6
References
Summary
In this tutorial we learn how to install r-bioc-cner package on Kali Linux using different package management tools: apt, apt-get and aptitude.