How To Install r-bioc-cner on Debian 10
Introduction
In this tutorial we learn how to install r-bioc-cner on Debian 10.
What is r-bioc-cner
r-bioc-cner is:
Large-scale identification and advanced visualization of sets of conserved noncoding elements.
There are three methods to install r-bioc-cner on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-cner Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-cner using apt-get by running the following command:
sudo apt-get -y install r-bioc-cner
Install r-bioc-cner Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-cner using apt by running the following command:
sudo apt -y install r-bioc-cner
Install r-bioc-cner Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-cner using aptitude by running the following command:
sudo aptitude -y install r-bioc-cner
How To Uninstall r-bioc-cner on Debian 10
To uninstall only the r-bioc-cner package we can use the following command:
sudo apt-get remove r-bioc-cner
Uninstall r-bioc-cner And Its Dependencies
To uninstall r-bioc-cner and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove r-bioc-cner
Remove r-bioc-cner Configurations and Data
To remove r-bioc-cner configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge r-bioc-cner
Remove r-bioc-cner configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-cner configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-cner
Dependencies
r-bioc-cner have the following dependencies:
- r-base-core
- r-api-3.5
- r-bioc-biostrings
- r-cran-dbi
- r-cran-rsqlite
- r-bioc-genomeinfodb
- r-bioc-genomicranges
- r-bioc-rtracklayer
- r-bioc-xvector
- r-bioc-genomicalignments
- r-bioc-s4vectors
- r-bioc-iranges
- r-cran-readr
- r-bioc-biocgenerics
- r-cran-reshape2
- r-cran-ggplot2
- r-cran-powerlaw
- r-bioc-annotate
- r-bioc-go.db
- r-cran-r.utils
- r-bioc-keggrest
- libc6
- zlib1g
References
Summary
In this tutorial we learn how to install r-bioc-cner package on Debian 10 using different package management tools: apt, apt-get and aptitude.