How To Install r-bioc-bsgenome on Kali Linux

Introduction

In this tutorial we learn how to install r-bioc-bsgenome on Kali Linux.

What is r-bioc-bsgenome

r-bioc-bsgenome is:

This BioConductor module provides some basic infrastructure for Biostrings-based genome data packages.

There are three methods to install r-bioc-bsgenome on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-bsgenome Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-bsgenome using apt-get by running the following command:

sudo apt-get -y install r-bioc-bsgenome

Install r-bioc-bsgenome Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-bsgenome using apt by running the following command:

sudo apt -y install r-bioc-bsgenome

Install r-bioc-bsgenome Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-bsgenome using aptitude by running the following command:

sudo aptitude -y install r-bioc-bsgenome

How To Uninstall r-bioc-bsgenome on Kali Linux

To uninstall only the r-bioc-bsgenome package we can use the following command:

sudo apt-get remove r-bioc-bsgenome

Uninstall r-bioc-bsgenome And Its Dependencies

To uninstall r-bioc-bsgenome and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-bsgenome

Remove r-bioc-bsgenome Configurations and Data

To remove r-bioc-bsgenome configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-bsgenome

Remove r-bioc-bsgenome configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-bsgenome configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-bsgenome

Dependencies

r-bioc-bsgenome have the following dependencies:

• r-base-core
• r-api-4.0
• r-api-bioc-3.12
• r-bioc-biocgenerics
• r-bioc-s4vectors
• r-bioc-iranges
• r-bioc-genomeinfodb
• r-bioc-genomicranges
• r-bioc-biostrings
• r-bioc-rtracklayer
• r-cran-matrixstats
• r-bioc-xvector
• r-bioc-rsamtools

References

• r-bioc-bsgenome website

Summary

In this tutorial we learn how to install r-bioc-bsgenome package on Kali Linux using different package management tools: apt, apt-get and aptitude.