How To Install r-bioc-biovizbase on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-biovizbase on Debian 12.
What is r-bioc-biovizbase
r-bioc-biovizbase is:
The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.
There are three methods to install r-bioc-biovizbase on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-biovizbase Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-biovizbase using apt-get by running the following command:
sudo apt-get -y install r-bioc-biovizbase
Install r-bioc-biovizbase Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-biovizbase using apt by running the following command:
sudo apt -y install r-bioc-biovizbase
Install r-bioc-biovizbase Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-biovizbase using aptitude by running the following command:
sudo aptitude -y install r-bioc-biovizbase
How To Uninstall r-bioc-biovizbase on Debian 12
To uninstall only the r-bioc-biovizbase package we can use the following command:
sudo apt-get remove r-bioc-biovizbase
Uninstall r-bioc-biovizbase And Its Dependencies
To uninstall r-bioc-biovizbase and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-biovizbase
Remove r-bioc-biovizbase Configurations and Data
To remove r-bioc-biovizbase configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-biovizbase
Remove r-bioc-biovizbase configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-biovizbase configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-biovizbase
Dependencies
r-bioc-biovizbase have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-scales
- r-cran-hmisc
- r-cran-rcolorbrewer
- r-cran-dichromat
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-iranges
- r-bioc-genomeinfodb
- r-bioc-genomicranges
- r-bioc-summarizedexperiment
- r-bioc-biostrings
- r-bioc-rsamtools
- r-bioc-genomicalignments
- r-bioc-genomicfeatures
- r-bioc-annotationdbi
- r-bioc-variantannotation
- r-bioc-ensembldb
- r-bioc-annotationfilter
- r-cran-rlang
- libc6
References
Summary
In this tutorial we learn how to install r-bioc-biovizbase package on Debian 12 using different package management tools: apt, apt-get and aptitude.
