How To Install r-bioc-biocstyle on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-biocstyle on Debian 12.
What is r-bioc-biocstyle
r-bioc-biocstyle is:
Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.
There are three methods to install r-bioc-biocstyle on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-biocstyle Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-biocstyle using apt-get by running the following command:
sudo apt-get -y install r-bioc-biocstyle
Install r-bioc-biocstyle Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-biocstyle using apt by running the following command:
sudo apt -y install r-bioc-biocstyle
Install r-bioc-biocstyle Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-biocstyle using aptitude by running the following command:
sudo aptitude -y install r-bioc-biocstyle
How To Uninstall r-bioc-biocstyle on Debian 12
To uninstall only the r-bioc-biocstyle package we can use the following command:
sudo apt-get remove r-bioc-biocstyle
Uninstall r-bioc-biocstyle And Its Dependencies
To uninstall r-bioc-biocstyle and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-biocstyle
Remove r-bioc-biocstyle Configurations and Data
To remove r-bioc-biocstyle configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-biocstyle
Remove r-bioc-biocstyle configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-biocstyle configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-biocstyle
Dependencies
r-bioc-biocstyle have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-cran-bookdown
- r-cran-knitr
- r-cran-rmarkdown
- r-cran-yaml
- r-cran-biocmanager
- texlive-bibtex-extra
References
Summary
In this tutorial we learn how to install r-bioc-biocstyle package on Debian 12 using different package management tools: apt, apt-get and aptitude.
