How To Install r-bioc-biocneighbors on Kali Linux

In this tutorial we learn how to install r-bioc-biocneighbors on Kali Linux. r-bioc-biocneighbors is Nearest Neighbor Detection for Bioconductor Packages

Introduction

In this tutorial we learn how to install r-bioc-biocneighbors on Kali Linux.

What is r-bioc-biocneighbors

r-bioc-biocneighbors is:

Implements exact and approximate methods for nearest neighbor detection, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Exact searches can be performed using the k-means for k-nearest neighbors algorithm or with vantage point trees. Approximate searches can be performed using the Annoy or HNSW libraries. Searching on either Euclidean or Manhattan distances is supported. Parallelization is achieved for all methods by using BiocParallel. Functions are also provided to search for all neighbors within a given distance.

There are three methods to install r-bioc-biocneighbors on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-biocneighbors Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-biocneighbors using apt-get by running the following command:

sudo apt-get -y install r-bioc-biocneighbors

Install r-bioc-biocneighbors Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-biocneighbors using apt by running the following command:

sudo apt -y install r-bioc-biocneighbors

Install r-bioc-biocneighbors Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-biocneighbors using aptitude by running the following command:

sudo aptitude -y install r-bioc-biocneighbors

How To Uninstall r-bioc-biocneighbors on Kali Linux

To uninstall only the r-bioc-biocneighbors package we can use the following command:

sudo apt-get remove r-bioc-biocneighbors

Uninstall r-bioc-biocneighbors And Its Dependencies

To uninstall r-bioc-biocneighbors and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-bioc-biocneighbors

Remove r-bioc-biocneighbors Configurations and Data

To remove r-bioc-biocneighbors configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-bioc-biocneighbors

Remove r-bioc-biocneighbors configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-biocneighbors configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-biocneighbors

Dependencies

r-bioc-biocneighbors have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-biocneighbors package on Kali Linux using different package management tools: apt, apt-get and aptitude.