How To Install r-bioc-biocio on Debian 12

Learn how to install r-bioc-biocio on Debian 12 with this tutorial. r-bioc-biocio is standard input and output for Bioconductor packages

Introduction

In this tutorial we learn how to install r-bioc-biocio on Debian 12.

What is r-bioc-biocio

r-bioc-biocio is:

Implements import() and export() standard generics for importing and exporting biological data formats. import() supports whole-file as well as chunk-wise iterative import. The import() interface optionally provides a standard mechanism for ’lazy’ access via filter() (on row or element-like components of the file resource), select() (on column-like components of the file resource) and collect(). The import() interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., .loom for dispatch from character-based URIs to specific import() / export() methods based on classes representing file types, e.g., LoomFile().

There are three methods to install r-bioc-biocio on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-bioc-biocio Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-bioc-biocio using apt-get by running the following command:

sudo apt-get -y install r-bioc-biocio

Install r-bioc-biocio Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-bioc-biocio using apt by running the following command:

sudo apt -y install r-bioc-biocio

Install r-bioc-biocio Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-bioc-biocio using aptitude by running the following command:

sudo aptitude -y install r-bioc-biocio

How To Uninstall r-bioc-biocio on Debian 12

To uninstall only the r-bioc-biocio package we can use the following command:

sudo apt-get remove r-bioc-biocio

Uninstall r-bioc-biocio And Its Dependencies

To uninstall r-bioc-biocio and its dependencies that are no longer needed by Debian 12, we can use the command below:

sudo apt-get -y autoremove r-bioc-biocio

Remove r-bioc-biocio Configurations and Data

To remove r-bioc-biocio configuration and data from Debian 12 we can use the following command:

sudo apt-get -y purge r-bioc-biocio

Remove r-bioc-biocio configuration, data, and all of its dependencies

We can use the following command to remove r-bioc-biocio configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-bioc-biocio

Dependencies

r-bioc-biocio have the following dependencies:

References

Summary

In this tutorial we learn how to install r-bioc-biocio package on Debian 12 using different package management tools: apt, apt-get and aptitude.