How To Install r-bioc-bioccheck on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-bioccheck on Debian 12.
What is r-bioc-bioccheck
r-bioc-bioccheck is:
Executes Bioconductor-specific package checks.
There are three methods to install r-bioc-bioccheck on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-bioccheck Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-bioccheck using apt-get by running the following command:
sudo apt-get -y install r-bioc-bioccheck
Install r-bioc-bioccheck Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-bioccheck using apt by running the following command:
sudo apt -y install r-bioc-bioccheck
Install r-bioc-bioccheck Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-bioccheck using aptitude by running the following command:
sudo aptitude -y install r-bioc-bioccheck
How To Uninstall r-bioc-bioccheck on Debian 12
To uninstall only the r-bioc-bioccheck package we can use the following command:
sudo apt-get remove r-bioc-bioccheck
Uninstall r-bioc-bioccheck And Its Dependencies
To uninstall r-bioc-bioccheck and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-bioccheck
Remove r-bioc-bioccheck Configurations and Data
To remove r-bioc-bioccheck configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-bioccheck
Remove r-bioc-bioccheck configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-bioccheck configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-bioccheck
Dependencies
r-bioc-bioccheck have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocviews
- r-cran-biocmanager
- r-cran-stringdist
- r-bioc-graph
- r-cran-httr
- r-cran-codetools
- r-cran-knitr
References
Summary
In this tutorial we learn how to install r-bioc-bioccheck package on Debian 12 using different package management tools: apt, apt-get and aptitude.
