How To Install r-bioc-ballgown on Debian 12
Introduction
In this tutorial we learn how to install r-bioc-ballgown on Debian 12.
What is r-bioc-ballgown
r-bioc-ballgown is:
Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.
There are three methods to install r-bioc-ballgown on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-bioc-ballgown Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install r-bioc-ballgown using apt-get by running the following command:
sudo apt-get -y install r-bioc-ballgown
Install r-bioc-ballgown Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install r-bioc-ballgown using apt by running the following command:
sudo apt -y install r-bioc-ballgown
Install r-bioc-ballgown Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install r-bioc-ballgown using aptitude by running the following command:
sudo aptitude -y install r-bioc-ballgown
How To Uninstall r-bioc-ballgown on Debian 12
To uninstall only the r-bioc-ballgown package we can use the following command:
sudo apt-get remove r-bioc-ballgown
Uninstall r-bioc-ballgown And Its Dependencies
To uninstall r-bioc-ballgown and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove r-bioc-ballgown
Remove r-bioc-ballgown Configurations and Data
To remove r-bioc-ballgown configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge r-bioc-ballgown
Remove r-bioc-ballgown configuration, data, and all of its dependencies
We can use the following command to remove r-bioc-ballgown configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-bioc-ballgown
Dependencies
r-bioc-ballgown have the following dependencies:
- r-base-core
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-genomicranges
- r-bioc-iranges
- r-bioc-s4vectors
- r-cran-rcolorbrewer
- r-bioc-sva
- r-bioc-limma
- r-bioc-rtracklayer
- r-bioc-biobase
- r-bioc-genomeinfodb
References
Summary
In this tutorial we learn how to install r-bioc-ballgown package on Debian 12 using different package management tools: apt, apt-get and aptitude.
