How To Install python3-unifrac on Ubuntu 22.04
Introduction
In this tutorial we learn how to install python3-unifrac
on Ubuntu 22.04.
What is python3-unifrac
python3-unifrac is:
The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith’s PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.
This package contains the Python3 module.
There are three methods to install python3-unifrac
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install python3-unifrac Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install python3-unifrac
using apt-get
by running the following command:
sudo apt-get -y install python3-unifrac
Install python3-unifrac Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install python3-unifrac
using apt
by running the following command:
sudo apt -y install python3-unifrac
Install python3-unifrac Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install python3-unifrac
using aptitude
by running the following command:
sudo aptitude -y install python3-unifrac
How To Uninstall python3-unifrac on Ubuntu 22.04
To uninstall only the python3-unifrac
package we can use the following command:
sudo apt-get remove python3-unifrac
Uninstall python3-unifrac And Its Dependencies
To uninstall python3-unifrac
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove python3-unifrac
Remove python3-unifrac Configurations and Data
To remove python3-unifrac
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge python3-unifrac
Remove python3-unifrac configuration, data, and all of its dependencies
We can use the following command to remove python3-unifrac
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-unifrac
References
Summary
In this tutorial we learn how to install python3-unifrac
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.