How To Install python3-pyranges on Kali Linux

In this tutorial we learn how to install python3-pyranges on Kali Linux. python3-pyranges is 2D representation of genomic intervals and their annotations

Introduction

In this tutorial we learn how to install python3-pyranges on Kali Linux.

What is python3-pyranges

python3-pyranges is:

A PyRanges object must have the columns Chromosome, Start and End. These describe the genomic position and function as implicit row labels. A Strand column is optional and adds strand information to the intervals. Any other columns are allowed and are considered metadata.

The structure can be filled from .bed, .bam or .gff files, also from tabular or textual representations.

There are three methods to install python3-pyranges on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install python3-pyranges Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install python3-pyranges using apt-get by running the following command:

sudo apt-get -y install python3-pyranges

Install python3-pyranges Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install python3-pyranges using apt by running the following command:

sudo apt -y install python3-pyranges

Install python3-pyranges Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install python3-pyranges using aptitude by running the following command:

sudo aptitude -y install python3-pyranges

How To Uninstall python3-pyranges on Kali Linux

To uninstall only the python3-pyranges package we can use the following command:

sudo apt-get remove python3-pyranges

Uninstall python3-pyranges And Its Dependencies

To uninstall python3-pyranges and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove python3-pyranges

Remove python3-pyranges Configurations and Data

To remove python3-pyranges configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge python3-pyranges

Remove python3-pyranges configuration, data, and all of its dependencies

We can use the following command to remove python3-pyranges configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge python3-pyranges

Dependencies

python3-pyranges have the following dependencies:

References

Summary

In this tutorial we learn how to install python3-pyranges package on Kali Linux using different package management tools: apt, apt-get and aptitude.