How To Install python3-pybel on Debian 12

Learn how to install python3-pybel on Debian 12 with this tutorial. python3-pybel is Biological Expression Language

Introduction

In this tutorial we learn how to install python3-pybel on Debian 12.

What is `python3-pybel`

python3-pybel is:

PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version

It also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J.

This package installs the library for Python 3.

There are three methods to install python3-pybel on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install python3-pybel Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install python3-pybel using apt-get by running the following command:

sudo apt-get -y install python3-pybel

Install python3-pybel Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install python3-pybel using apt by running the following command:

sudo apt -y install python3-pybel

Install python3-pybel Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install python3-pybel using aptitude by running the following command:

sudo aptitude -y install python3-pybel

How To Uninstall python3-pybel on Debian 12

To uninstall only the python3-pybel package we can use the following command:

sudo apt-get remove python3-pybel

Uninstall python3-pybel And Its Dependencies

To uninstall python3-pybel and its dependencies that are no longer needed by Debian 12, we can use the command below:

sudo apt-get -y autoremove python3-pybel

Remove python3-pybel Configurations and Data

To remove python3-pybel configuration and data from Debian 12 we can use the following command:

sudo apt-get -y purge python3-pybel

Remove python3-pybel configuration, data, and all of its dependencies

We can use the following command to remove python3-pybel configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge python3-pybel

Dependencies

python3-pybel have the following dependencies:

References

Summary

In this tutorial we learn how to install python3-pybel package on Debian 12 using different package management tools: apt, apt-get and aptitude.