How To Install python3-pybedtools on Ubuntu 22.04
Introduction
In this tutorial we learn how to install python3-pybedtools
on Ubuntu 22.04.
What is python3-pybedtools
python3-pybedtools is:
The BEDTools suite of programs is widely used for genomic interval manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.
This is the Python 3 version.
There are three methods to install python3-pybedtools
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install python3-pybedtools Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install python3-pybedtools
using apt-get
by running the following command:
sudo apt-get -y install python3-pybedtools
Install python3-pybedtools Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install python3-pybedtools
using apt
by running the following command:
sudo apt -y install python3-pybedtools
Install python3-pybedtools Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install python3-pybedtools
using aptitude
by running the following command:
sudo aptitude -y install python3-pybedtools
How To Uninstall python3-pybedtools on Ubuntu 22.04
To uninstall only the python3-pybedtools
package we can use the following command:
sudo apt-get remove python3-pybedtools
Uninstall python3-pybedtools And Its Dependencies
To uninstall python3-pybedtools
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove python3-pybedtools
Remove python3-pybedtools Configurations and Data
To remove python3-pybedtools
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge python3-pybedtools
Remove python3-pybedtools configuration, data, and all of its dependencies
We can use the following command to remove python3-pybedtools
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-pybedtools
References
Summary
In this tutorial we learn how to install python3-pybedtools
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.