How To Install python3-presto on Ubuntu 22.04
Introduction
In this tutorial we learn how to install python3-presto
on Ubuntu 22.04.
What is python3-presto
python3-presto is:
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
This package provides the presto Python3 module.
There are three methods to install python3-presto
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install python3-presto Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install python3-presto
using apt-get
by running the following command:
sudo apt-get -y install python3-presto
Install python3-presto Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install python3-presto
using apt
by running the following command:
sudo apt -y install python3-presto
Install python3-presto Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install python3-presto
using aptitude
by running the following command:
sudo aptitude -y install python3-presto
How To Uninstall python3-presto on Ubuntu 22.04
To uninstall only the python3-presto
package we can use the following command:
sudo apt-get remove python3-presto
Uninstall python3-presto And Its Dependencies
To uninstall python3-presto
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove python3-presto
Remove python3-presto Configurations and Data
To remove python3-presto
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge python3-presto
Remove python3-presto configuration, data, and all of its dependencies
We can use the following command to remove python3-presto
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-presto
References
Summary
In this tutorial we learn how to install python3-presto
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.