How To Install python3-presto on Kali Linux
Introduction
In this tutorial we learn how to install python3-presto on Kali Linux.
What is python3-presto
python3-presto is:
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
This package provides the presto Python3 module.
There are three methods to install python3-presto on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-presto Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install python3-presto using apt-get by running the following command:
sudo apt-get -y install python3-prestoInstall python3-presto Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install python3-presto using apt by running the following command:
sudo apt -y install python3-prestoInstall python3-presto Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install python3-presto using aptitude by running the following command:
sudo aptitude -y install python3-prestoHow To Uninstall python3-presto on Kali Linux
To uninstall only the python3-presto package we can use the following command:
sudo apt-get remove python3-prestoUninstall python3-presto And Its Dependencies
To uninstall python3-presto and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove python3-prestoRemove python3-presto Configurations and Data
To remove python3-presto configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge python3-prestoRemove python3-presto configuration, data, and all of its dependencies
We can use the following command to remove python3-presto configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-prestoDependencies
python3-presto have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-presto package on Kali Linux using different package management tools: apt, apt-get and aptitude.
