How To Install python3-presto on Debian 10
Introduction
In this tutorial we learn how to install python3-presto on Debian 10.
What is python3-presto
python3-presto is:
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
There are three methods to install python3-presto on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-presto Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-presto using apt-get by running the following command:
sudo apt-get -y install python3-presto
Install python3-presto Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-presto using apt by running the following command:
sudo apt -y install python3-presto
Install python3-presto Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-presto using aptitude by running the following command:
sudo aptitude -y install python3-presto
How To Uninstall python3-presto on Debian 10
To uninstall only the python3-presto package we can use the following command:
sudo apt-get remove python3-presto
Uninstall python3-presto And Its Dependencies
To uninstall python3-presto and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove python3-presto
Remove python3-presto Configurations and Data
To remove python3-presto configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge python3-presto
Remove python3-presto configuration, data, and all of its dependencies
We can use the following command to remove python3-presto configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-presto
Dependencies
python3-presto have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-presto package on Debian 10 using different package management tools: apt, apt-get and aptitude.