How To Install python3-pairtools on Debian 12
Introduction
In this tutorial we learn how to install python3-pairtools on Debian 12.
What is python3-pairtools
python3-pairtools is:
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
There are three methods to install python3-pairtools on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-pairtools Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-pairtools using apt-get by running the following command:
sudo apt-get -y install python3-pairtools
Install python3-pairtools Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-pairtools using apt by running the following command:
sudo apt -y install python3-pairtools
Install python3-pairtools Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-pairtools using aptitude by running the following command:
sudo aptitude -y install python3-pairtools
How To Uninstall python3-pairtools on Debian 12
To uninstall only the python3-pairtools package we can use the following command:
sudo apt-get remove python3-pairtools
Uninstall python3-pairtools And Its Dependencies
To uninstall python3-pairtools and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove python3-pairtools
Remove python3-pairtools Configurations and Data
To remove python3-pairtools configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge python3-pairtools
Remove python3-pairtools configuration, data, and all of its dependencies
We can use the following command to remove python3-pairtools configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-pairtools
Dependencies
python3-pairtools have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-pairtools package on Debian 12 using different package management tools: apt, apt-get and aptitude.
