How To Install python3-mappy on Kali Linux
Introduction
In this tutorial we learn how to install python3-mappy on Kali Linux.
What is python3-mappy
python3-mappy is:
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
This package contains the Python3 interface for using minimap2.
There are three methods to install python3-mappy on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-mappy Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install python3-mappy using apt-get by running the following command:
sudo apt-get -y install python3-mappyInstall python3-mappy Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install python3-mappy using apt by running the following command:
sudo apt -y install python3-mappyInstall python3-mappy Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install python3-mappy using aptitude by running the following command:
sudo aptitude -y install python3-mappyHow To Uninstall python3-mappy on Kali Linux
To uninstall only the python3-mappy package we can use the following command:
sudo apt-get remove python3-mappyUninstall python3-mappy And Its Dependencies
To uninstall python3-mappy and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove python3-mappyRemove python3-mappy Configurations and Data
To remove python3-mappy configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge python3-mappyRemove python3-mappy configuration, data, and all of its dependencies
We can use the following command to remove python3-mappy configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-mappyDependencies
python3-mappy have the following dependencies:
References
Summary
In this tutorial we learn how to install python3-mappy package on Kali Linux using different package management tools: apt, apt-get and aptitude.
