How To Install python3-cooler on Debian 12
Introduction
In this tutorial we learn how to install python3-cooler on Debian 12.
What is python3-cooler
python3-cooler is:
Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.
The cooler file format is an implementation of a genomic matrix data model using HDF5 as the container format. The cooler package includes a suite of command line tools and a Python API to facilitate creating, querying and manipulating cooler files.
There are three methods to install python3-cooler on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-cooler Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-cooler using apt-get by running the following command:
sudo apt-get -y install python3-cooler
Install python3-cooler Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-cooler using apt by running the following command:
sudo apt -y install python3-cooler
Install python3-cooler Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-cooler using aptitude by running the following command:
sudo aptitude -y install python3-cooler
How To Uninstall python3-cooler on Debian 12
To uninstall only the python3-cooler package we can use the following command:
sudo apt-get remove python3-cooler
Uninstall python3-cooler And Its Dependencies
To uninstall python3-cooler and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove python3-cooler
Remove python3-cooler Configurations and Data
To remove python3-cooler configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge python3-cooler
Remove python3-cooler configuration, data, and all of its dependencies
We can use the following command to remove python3-cooler configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-cooler
Dependencies
python3-cooler have the following dependencies:
- python3-asciitree
- python3-click
- python3-cytoolz
- python3-h5py
- python3-multiprocess
- python3-numpy
- python3-pandas
- python3-pyfaidx
- python3-scipy
- python3-simplejson
- python3-yaml
- python3
References
Summary
In this tutorial we learn how to install python3-cooler package on Debian 12 using different package management tools: apt, apt-get and aptitude.