How To Install python3-bcbio-gff on Ubuntu 22.04
Introduction
In this tutorial we learn how to install python3-bcbio-gff on Ubuntu 22.04.
What is python3-bcbio-gff
python3-bcbio-gff is:
A Python library to read and write Generic Feature Format (GFF).
Generic Feature Format (GFF) is a biological sequence file format for representing features and annotations on sequences. It is a tab delimited format, making it accessible to biologists and editable in text editors and spreadsheet programs. It is also well defined and can be parsed via automated programs. GFF files are available from many of the large sequencing and annotation centers.
There are three methods to install python3-bcbio-gff on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python3-bcbio-gff Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install python3-bcbio-gff using apt-get by running the following command:
sudo apt-get -y install python3-bcbio-gff
Install python3-bcbio-gff Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install python3-bcbio-gff using apt by running the following command:
sudo apt -y install python3-bcbio-gff
Install python3-bcbio-gff Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install python3-bcbio-gff using aptitude by running the following command:
sudo aptitude -y install python3-bcbio-gff
How To Uninstall python3-bcbio-gff on Ubuntu 22.04
To uninstall only the python3-bcbio-gff package we can use the following command:
sudo apt-get remove python3-bcbio-gff
Uninstall python3-bcbio-gff And Its Dependencies
To uninstall python3-bcbio-gff and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove python3-bcbio-gff
Remove python3-bcbio-gff Configurations and Data
To remove python3-bcbio-gff configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge python3-bcbio-gff
Remove python3-bcbio-gff configuration, data, and all of its dependencies
We can use the following command to remove python3-bcbio-gff configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python3-bcbio-gff
References
Summary
In this tutorial we learn how to install python3-bcbio-gff package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.