How To Install python3-anndata on Debian 12

Learn how to install python3-anndata on Debian 12 with this tutorial. python3-anndata is annotated gene by sample numpy matrix

Introduction

In this tutorial we learn how to install python3-anndata on Debian 12.

What is `python3-anndata`

python3-anndata is:

AnnData provides a scalable way of keeping track of data together with learned annotations. It is used within Scanpy, for which it was initially developed. Both packages have been introduced in Genome Biology (2018).

There are three methods to install python3-anndata on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install python3-anndata Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install python3-anndata using apt-get by running the following command:

sudo apt-get -y install python3-anndata

Install python3-anndata Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install python3-anndata using apt by running the following command:

sudo apt -y install python3-anndata

Install python3-anndata Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install python3-anndata using aptitude by running the following command:

sudo aptitude -y install python3-anndata

How To Uninstall python3-anndata on Debian 12

To uninstall only the python3-anndata package we can use the following command:

sudo apt-get remove python3-anndata

Uninstall python3-anndata And Its Dependencies

To uninstall python3-anndata and its dependencies that are no longer needed by Debian 12, we can use the command below:

sudo apt-get -y autoremove python3-anndata

Remove python3-anndata Configurations and Data

To remove python3-anndata configuration and data from Debian 12 we can use the following command:

sudo apt-get -y purge python3-anndata

Remove python3-anndata configuration, data, and all of its dependencies

We can use the following command to remove python3-anndata configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge python3-anndata

Dependencies

python3-anndata have the following dependencies:

References

Summary

In this tutorial we learn how to install python3-anndata package on Debian 12 using different package management tools: apt, apt-get and aptitude.