How To Install python-pyfaidx-examples on Kali Linux
Introduction
In this tutorial we learn how to install python-pyfaidx-examples on Kali Linux.
What is python-pyfaidx-examples
python-pyfaidx-examples is:
Samtools provides a function “faidx” (FAsta InDeX), which creates a small flat index file “.fai” allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script “faidx” is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.
This package provides example data to test the Python modules.
There are three methods to install python-pyfaidx-examples on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python-pyfaidx-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install python-pyfaidx-examples using apt-get by running the following command:
sudo apt-get -y install python-pyfaidx-examplesInstall python-pyfaidx-examples Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install python-pyfaidx-examples using apt by running the following command:
sudo apt -y install python-pyfaidx-examplesInstall python-pyfaidx-examples Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install python-pyfaidx-examples using aptitude by running the following command:
sudo aptitude -y install python-pyfaidx-examplesHow To Uninstall python-pyfaidx-examples on Kali Linux
To uninstall only the python-pyfaidx-examples package we can use the following command:
sudo apt-get remove python-pyfaidx-examplesUninstall python-pyfaidx-examples And Its Dependencies
To uninstall python-pyfaidx-examples and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove python-pyfaidx-examplesRemove python-pyfaidx-examples Configurations and Data
To remove python-pyfaidx-examples configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge python-pyfaidx-examplesRemove python-pyfaidx-examples configuration, data, and all of its dependencies
We can use the following command to remove python-pyfaidx-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python-pyfaidx-examplesDependencies
python-pyfaidx-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install python-pyfaidx-examples package on Kali Linux using different package management tools: apt, apt-get and aptitude.
