How To Install python-pairix-examples on Kali Linux

Introduction

In this tutorial we learn how to install python-pairix-examples on Kali Linux.

What is python-pairix-examples

python-pairix-examples is:

Pairix is a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates.

Pairix is a stand-alone C program that was written on top of tabix as a tool for the 4DN-standard pairs file format describing Hi-C data: pairs_format_specification.md

However, Pairix can be used as a generic tool for indexing and querying any bgzipped text file containing genomic coordinates, for either 2D- or 1D- indexing and querying.

For example: given the custom text file below, you want to extract specific lines from the Pairs file further below. An awk command would read the Pairs file from beginning to end. Pairix creates an index and uses it to access the file from a relevant position by taking advantage of bgzf compression, allowing for a fast query on large files.

This package contains some example data to test the package.

There are three methods to install python-pairix-examples on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install python-pairix-examples Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install python-pairix-examples using apt-get by running the following command:

sudo apt-get -y install python-pairix-examples

Install python-pairix-examples Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install python-pairix-examples using apt by running the following command:

sudo apt -y install python-pairix-examples

Install python-pairix-examples Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install python-pairix-examples using aptitude by running the following command:

sudo aptitude -y install python-pairix-examples

How To Uninstall python-pairix-examples on Kali Linux

To uninstall only the python-pairix-examples package we can use the following command:

sudo apt-get remove python-pairix-examples

Uninstall python-pairix-examples And Its Dependencies

To uninstall python-pairix-examples and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove python-pairix-examples

Remove python-pairix-examples Configurations and Data

To remove python-pairix-examples configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge python-pairix-examples

Remove python-pairix-examples configuration, data, and all of its dependencies

We can use the following command to remove python-pairix-examples configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge python-pairix-examples

Dependencies

python-pairix-examples have the following dependencies:

References

• python-pairix-examples website

Summary

In this tutorial we learn how to install python-pairix-examples package on Kali Linux using different package management tools: apt, apt-get and aptitude.