How To Install python-mdtraj-doc on Kali Linux
Introduction
In this tutorial we learn how to install python-mdtraj-doc on Kali Linux.
What is python-mdtraj-doc
python-mdtraj-doc is:
Read, write and analyze MD trajectories with only a few lines of Python code.
MDTraj is a python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include:
- Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more.
- Extremely fast RMSD calculations (4x the speed of the original Theobald QCP).
- Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables.
- Lightweight, Pythonic API.
This is the documentation package for mdtraj.
There are three methods to install python-mdtraj-doc on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install python-mdtraj-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install python-mdtraj-doc using apt-get by running the following command:
sudo apt-get -y install python-mdtraj-docInstall python-mdtraj-doc Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install python-mdtraj-doc using apt by running the following command:
sudo apt -y install python-mdtraj-docInstall python-mdtraj-doc Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install python-mdtraj-doc using aptitude by running the following command:
sudo aptitude -y install python-mdtraj-docHow To Uninstall python-mdtraj-doc on Kali Linux
To uninstall only the python-mdtraj-doc package we can use the following command:
sudo apt-get remove python-mdtraj-docUninstall python-mdtraj-doc And Its Dependencies
To uninstall python-mdtraj-doc and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove python-mdtraj-docRemove python-mdtraj-doc Configurations and Data
To remove python-mdtraj-doc configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge python-mdtraj-docRemove python-mdtraj-doc configuration, data, and all of its dependencies
We can use the following command to remove python-mdtraj-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python-mdtraj-docDependencies
python-mdtraj-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install python-mdtraj-doc package on Kali Linux using different package management tools: apt, apt-get and aptitude.