How To Install python-biom-format-doc on Ubuntu 22.04
Introduction
In this tutorial we learn how to install python-biom-format-doc
on Ubuntu 22.04.
What is python-biom-format-doc
python-biom-format-doc is:
The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project.
The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome.
This package provides the documentation for the BIOM format Python package.
There are three methods to install python-biom-format-doc
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install python-biom-format-doc Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install python-biom-format-doc
using apt-get
by running the following command:
sudo apt-get -y install python-biom-format-doc
Install python-biom-format-doc Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install python-biom-format-doc
using apt
by running the following command:
sudo apt -y install python-biom-format-doc
Install python-biom-format-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install python-biom-format-doc
using aptitude
by running the following command:
sudo aptitude -y install python-biom-format-doc
How To Uninstall python-biom-format-doc on Ubuntu 22.04
To uninstall only the python-biom-format-doc
package we can use the following command:
sudo apt-get remove python-biom-format-doc
Uninstall python-biom-format-doc And Its Dependencies
To uninstall python-biom-format-doc
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove python-biom-format-doc
Remove python-biom-format-doc Configurations and Data
To remove python-biom-format-doc
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge python-biom-format-doc
Remove python-biom-format-doc configuration, data, and all of its dependencies
We can use the following command to remove python-biom-format-doc
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge python-biom-format-doc
References
Summary
In this tutorial we learn how to install python-biom-format-doc
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.