How To Install psortb on Debian 11
Introduction
In this tutorial we learn how to install psortb
on Debian 11.
What is psortb
psortb is:
PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes.
There are three methods to install psortb
on Debian 11. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install psortb Using apt-get
Update apt database with apt-get
using the following command.
After updating apt database, We can install psortb
using apt-get
by running the following command:
Install psortb Using apt
Update apt database with apt
using the following command.
After updating apt database, We can install psortb
using apt
by running the following command:
Install psortb Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
After updating apt database, We can install psortb
using aptitude
by running the following command:
How To Uninstall psortb on Debian 11
To uninstall only the psortb
package we can use the following command:
Uninstall psortb And Its Dependencies
To uninstall psortb
and its dependencies that are no longer needed by Debian 11, we can use the command below:
Remove psortb Configurations and Data
To remove psortb
configuration and data from Debian 11 we can use the following command:
Remove psortb configuration, data, and all of its dependencies
We can use the following command to remove psortb
configurations, data and all of its dependencies, we can use the following command:
Dependencies
psortb have the following dependencies:
- libc6
- libgcc-s1
- libmodhmm0
- libsquid1
- libstdc++6
- libsvmloc0
- perl
- perlapi-5.32.0
- libbio-perl-perl
- libalgorithm-svm-perl
- pftools
- librpc-xml-perl
References
Summary
In this tutorial we learn how to install psortb
package on Debian 11 using different package management tools: apt
, apt-get
and aptitude
.