How To Install provean on Debian 12
Introduction
In this tutorial we learn how to install provean on Debian 12.
What is provean
provean is:
PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.
PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important.
The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2.
A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse.
There are three methods to install provean on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install provean Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install provean using apt-get by running the following command:
sudo apt-get -y install provean
Install provean Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install provean using apt by running the following command:
sudo apt -y install provean
Install provean Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install provean using aptitude by running the following command:
sudo aptitude -y install provean
How To Uninstall provean on Debian 12
To uninstall only the provean package we can use the following command:
sudo apt-get remove provean
Uninstall provean And Its Dependencies
To uninstall provean and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove provean
Remove provean Configurations and Data
To remove provean configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge provean
Remove provean configuration, data, and all of its dependencies
We can use the following command to remove provean configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge provean
Dependencies
provean have the following dependencies:
References
Summary
In this tutorial we learn how to install provean package on Debian 12 using different package management tools: apt, apt-get and aptitude.