How To Install profphd-net on Ubuntu 18.04
Introduction
In this tutorial we learn how to install profphd-net on Ubuntu 18.04.
What is profphd-net
profphd-net is:
Profnet is a component of the prediction methods that make up the Predict Protein service by the lab of Burkhard Rost. It provides the neural network component to a variety of predictors that perform protein feature prediction directly from sequence. This neural network implementation has to be compiled for every different network architecture.
This package contains the neural network architecture for profphd.
There are three methods to install profphd-net on Ubuntu 18.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install profphd-net Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install profphd-net using apt-get by running the following command:
sudo apt-get -y install profphd-net
Install profphd-net Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install profphd-net using apt by running the following command:
sudo apt -y install profphd-net
Install profphd-net Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install profphd-net using aptitude by running the following command:
sudo aptitude -y install profphd-net
How To Uninstall profphd-net on Ubuntu 18.04
To uninstall only the profphd-net package we can use the following command:
sudo apt-get remove profphd-net
Uninstall profphd-net And Its Dependencies
To uninstall profphd-net and its dependencies that are no longer needed by Ubuntu 18.04, we can use the command below:
sudo apt-get -y autoremove profphd-net
Remove profphd-net Configurations and Data
To remove profphd-net configuration and data from Ubuntu 18.04 we can use the following command:
sudo apt-get -y purge profphd-net
Remove profphd-net configuration, data, and all of its dependencies
We can use the following command to remove profphd-net configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge profphd-net
References
Summary
In this tutorial we learn how to install profphd-net package on Ubuntu 18.04 using different package management tools: apt, apt-get and aptitude.
