How To Install plink1.9 on Kali Linux
Introduction
In this tutorial we learn how to install plink1.9 on Kali Linux.
What is plink1.9
plink1.9 is:
plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented.
plink1.9 is a comprehensive update of plink with new algorithms and new methods, faster and less memory consumer than the first plink.
Please note: The executable was renamed to plink1.9 because of a name clash. Please read more about this in /usr/share/doc/plink1.9/README.Debian.
There are three methods to install plink1.9 on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install plink1.9 Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install plink1.9 using apt-get by running the following command:
sudo apt-get -y install plink1.9Install plink1.9 Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install plink1.9 using apt by running the following command:
sudo apt -y install plink1.9Install plink1.9 Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install plink1.9 using aptitude by running the following command:
sudo aptitude -y install plink1.9How To Uninstall plink1.9 on Kali Linux
To uninstall only the plink1.9 package we can use the following command:
sudo apt-get remove plink1.9Uninstall plink1.9 And Its Dependencies
To uninstall plink1.9 and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove plink1.9Remove plink1.9 Configurations and Data
To remove plink1.9 configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge plink1.9Remove plink1.9 configuration, data, and all of its dependencies
We can use the following command to remove plink1.9 configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge plink1.9Dependencies
plink1.9 have the following dependencies:
References
Summary
In this tutorial we learn how to install plink1.9 package on Kali Linux using different package management tools: apt, apt-get and aptitude.