How To Install pizzly on Debian 12
Introduction
In this tutorial we learn how to install pizzly on Debian 12.
What is pizzly
pizzly is:
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
There are three methods to install pizzly on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install pizzly Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install pizzly using apt-get by running the following command:
sudo apt-get -y install pizzly
Install pizzly Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install pizzly using apt by running the following command:
sudo apt -y install pizzly
Install pizzly Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install pizzly using aptitude by running the following command:
sudo aptitude -y install pizzly
How To Uninstall pizzly on Debian 12
To uninstall only the pizzly package we can use the following command:
sudo apt-get remove pizzly
Uninstall pizzly And Its Dependencies
To uninstall pizzly and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove pizzly
Remove pizzly Configurations and Data
To remove pizzly configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge pizzly
Remove pizzly configuration, data, and all of its dependencies
We can use the following command to remove pizzly configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge pizzly
Dependencies
pizzly have the following dependencies:
References
Summary
In this tutorial we learn how to install pizzly package on Debian 12 using different package management tools: apt, apt-get and aptitude.