How To Install pique-doc on Kali Linux

Introduction

In this tutorial we learn how to install pique-doc on Kali Linux.

What is pique-doc

pique-doc is:

PIQUE is a software pipeline for performing genome wide association studies (GWAS). The main function of PIQUE is to provide ??convenience?? wrappers that allow users to perform GWAS using the popular program EMMAX (Kang et al., 2010) without the need to be familiar with all of the software tools used to generate the required EMMAX input files. PIQUE will also perform a number of quality control steps prior to running EMMAX, ensuring that the various input data files are in the correct format. PIQUE proceeds in two main stages although there are multiple entry and exit points from which the pipeline can be run. The first stage consists of running the ??pique-input?? program, which can read genotype and phenotype information in several different formats and generates all the necessary input files required to run EMMAX. The second step in the pipeline uses the ??pique-run?? program to actually run EMMAX using the files generated by ??pique-input?? (or pre-existing user-supplied input files) to perform the GWAS and output the analysis summary files.

This package contains the documentation as well as example data.

There are three methods to install pique-doc on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install pique-doc Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install pique-doc using apt-get by running the following command:

sudo apt-get -y install pique-doc

Install pique-doc Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install pique-doc using apt by running the following command:

sudo apt -y install pique-doc

Install pique-doc Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install pique-doc using aptitude by running the following command:

sudo aptitude -y install pique-doc

How To Uninstall pique-doc on Kali Linux

To uninstall only the pique-doc package we can use the following command:

sudo apt-get remove pique-doc

Uninstall pique-doc And Its Dependencies

To uninstall pique-doc and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove pique-doc

Remove pique-doc Configurations and Data

To remove pique-doc configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge pique-doc

Remove pique-doc configuration, data, and all of its dependencies

We can use the following command to remove pique-doc configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge pique-doc

Dependencies

pique-doc have the following dependencies:

References

• pique-doc website

Summary

In this tutorial we learn how to install pique-doc package on Kali Linux using different package management tools: apt, apt-get and aptitude.