How To Install pique-doc on Debian 11
Introduction
In this tutorial we learn how to install pique-doc on Debian 11.
What is pique-doc
pique-doc is:
PIQUE is a software pipeline for performing genome wide association studies (GWAS). The main function of PIQUE is to provide ??convenience?? wrappers that allow users to perform GWAS using the popular program EMMAX (Kang et al., 2010) without the need to be familiar with all of the software tools used to generate the required EMMAX input files. PIQUE will also perform a number of quality control steps prior to running EMMAX, ensuring that the various input data files are in the correct format. PIQUE proceeds in two main stages although there are multiple entry and exit points from which the pipeline can be run. The first stage consists of running the ??pique-input?? program, which can read genotype and phenotype information in several different formats and generates all the necessary input files required to run EMMAX. The second step in the pipeline uses the ??pique-run?? program to actually run EMMAX using the files generated by ??pique-input?? (or pre-existing user-supplied input files) to perform the GWAS and output the analysis summary files.
This package contains the documentation as well as example data.
There are three methods to install pique-doc on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install pique-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install pique-doc using apt-get by running the following command:
sudo apt-get -y install pique-doc
Install pique-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install pique-doc using apt by running the following command:
sudo apt -y install pique-doc
Install pique-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install pique-doc using aptitude by running the following command:
sudo aptitude -y install pique-doc
How To Uninstall pique-doc on Debian 11
To uninstall only the pique-doc package we can use the following command:
sudo apt-get remove pique-doc
Uninstall pique-doc And Its Dependencies
To uninstall pique-doc and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove pique-doc
Remove pique-doc Configurations and Data
To remove pique-doc configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge pique-doc
Remove pique-doc configuration, data, and all of its dependencies
We can use the following command to remove pique-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge pique-doc
Dependencies
pique-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install pique-doc package on Debian 11 using different package management tools: apt, apt-get and aptitude.