How To Install pigx-rnaseq on Kali Linux

Introduction

In this tutorial we learn how to install pigx-rnaseq on Kali Linux.

What is pigx-rnaseq

pigx-rnaseq is:

This package provides a automated workflow for the automated analysis of RNA-seq experiments. A series of well-accecpted tools are connected in Python scripts and controlled via snakemake. This supports the parallel execution of these workflows and provides checkpointing, such that interrupted workflows can take up their work again.

There are three methods to install pigx-rnaseq on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install pigx-rnaseq Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install pigx-rnaseq using apt-get by running the following command:

sudo apt-get -y install pigx-rnaseq

Install pigx-rnaseq Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install pigx-rnaseq using apt by running the following command:

sudo apt -y install pigx-rnaseq

Install pigx-rnaseq Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install pigx-rnaseq using aptitude by running the following command:

sudo aptitude -y install pigx-rnaseq

How To Uninstall pigx-rnaseq on Kali Linux

To uninstall only the pigx-rnaseq package we can use the following command:

sudo apt-get remove pigx-rnaseq

Uninstall pigx-rnaseq And Its Dependencies

To uninstall pigx-rnaseq and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove pigx-rnaseq

Remove pigx-rnaseq Configurations and Data

To remove pigx-rnaseq configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge pigx-rnaseq

Remove pigx-rnaseq configuration, data, and all of its dependencies

We can use the following command to remove pigx-rnaseq configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge pigx-rnaseq

Dependencies

pigx-rnaseq have the following dependencies:

• python3

References

• pigx-rnaseq website

Summary

In this tutorial we learn how to install pigx-rnaseq package on Kali Linux using different package management tools: apt, apt-get and aptitude.