How To Install phylip-doc on Debian 12
Introduction
In this tutorial we learn how to install phylip-doc on Debian 12.
What is phylip-doc
phylip-doc is:
The PHYLogeny Inference Package is a package of programs for inferring phylogenies (evolutionary trees) from sequences. Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites, distance matrices, and 0/1 discrete characters.
This package contains the HTML documentation
There are three methods to install phylip-doc on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install phylip-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install phylip-doc using apt-get by running the following command:
sudo apt-get -y install phylip-doc
Install phylip-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install phylip-doc using apt by running the following command:
sudo apt -y install phylip-doc
Install phylip-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install phylip-doc using aptitude by running the following command:
sudo aptitude -y install phylip-doc
How To Uninstall phylip-doc on Debian 12
To uninstall only the phylip-doc package we can use the following command:
sudo apt-get remove phylip-doc
Uninstall phylip-doc And Its Dependencies
To uninstall phylip-doc and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove phylip-doc
Remove phylip-doc Configurations and Data
To remove phylip-doc configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge phylip-doc
Remove phylip-doc configuration, data, and all of its dependencies
We can use the following command to remove phylip-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge phylip-doc
Dependencies
phylip-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install phylip-doc package on Debian 12 using different package management tools: apt, apt-get and aptitude.
