How To Install paml-doc on Debian 12
Introduction
In this tutorial we learn how to install paml-doc on Debian 12.
What is paml-doc
paml-doc is:
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
The source code comes with a series of PDF files to help with further insights for the working of, and with, PAML.
There are three methods to install paml-doc on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install paml-doc Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install paml-doc using apt-get by running the following command:
sudo apt-get -y install paml-doc
Install paml-doc Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install paml-doc using apt by running the following command:
sudo apt -y install paml-doc
Install paml-doc Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install paml-doc using aptitude by running the following command:
sudo aptitude -y install paml-doc
How To Uninstall paml-doc on Debian 12
To uninstall only the paml-doc package we can use the following command:
sudo apt-get remove paml-doc
Uninstall paml-doc And Its Dependencies
To uninstall paml-doc and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove paml-doc
Remove paml-doc Configurations and Data
To remove paml-doc configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge paml-doc
Remove paml-doc configuration, data, and all of its dependencies
We can use the following command to remove paml-doc configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge paml-doc
Dependencies
paml-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install paml-doc package on Debian 12 using different package management tools: apt, apt-get and aptitude.