How To Install optimir on Ubuntu 20.04
Introduction
In this tutorial we learn how to install optimir
on Ubuntu 20.04.
What is optimir
optimir is:
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs’ expression.
There are three methods to install optimir
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install optimir Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install optimir
using apt-get
by running the following command:
sudo apt-get -y install optimir
Install optimir Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install optimir
using apt
by running the following command:
sudo apt -y install optimir
Install optimir Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install optimir
using aptitude
by running the following command:
sudo aptitude -y install optimir
How To Uninstall optimir on Ubuntu 20.04
To uninstall only the optimir
package we can use the following command:
sudo apt-get remove optimir
Uninstall optimir And Its Dependencies
To uninstall optimir
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove optimir
Remove optimir Configurations and Data
To remove optimir
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge optimir
Remove optimir configuration, data, and all of its dependencies
We can use the following command to remove optimir
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge optimir
References
Summary
In this tutorial we learn how to install optimir
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.