How To Install openms-doc on Kali Linux

In this tutorial we learn how to install openms-doc on Kali Linux. openms-doc is package for LC/MS data management and analysis - documentation

Introduction

In this tutorial we learn how to install openms-doc on Kali Linux.

What is openms-doc

openms-doc is:

OpenMS is a package for LC/MS data management and analysis. OpenMS offers an infrastructure for the development of mass spectrometry-related software and powerful 2D and 3D visualization solutions.

OpenMS offers analyses for various quantitation protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH??

It provides built-in algorithms for de-novo identification and database search, as well as adapters to other state-of-the art tools like X!Tandem, Mascot, OMSSA??

OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data and supports easy integration of tools into workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and a unified parameter handling.

This package brings full documentation for both the libopenms library package (libOpenMS and libOpenMS_GUI) and the OpenMS Proteomic Pipeline (topp) package.

There are three methods to install openms-doc on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install openms-doc Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install openms-doc using apt-get by running the following command:

sudo apt-get -y install openms-doc

Install openms-doc Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install openms-doc using apt by running the following command:

sudo apt -y install openms-doc

Install openms-doc Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install openms-doc using aptitude by running the following command:

sudo aptitude -y install openms-doc

How To Uninstall openms-doc on Kali Linux

To uninstall only the openms-doc package we can use the following command:

sudo apt-get remove openms-doc

Uninstall openms-doc And Its Dependencies

To uninstall openms-doc and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove openms-doc

Remove openms-doc Configurations and Data

To remove openms-doc configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge openms-doc

Remove openms-doc configuration, data, and all of its dependencies

We can use the following command to remove openms-doc configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge openms-doc

Dependencies

openms-doc have the following dependencies:

References

Summary

In this tutorial we learn how to install openms-doc package on Kali Linux using different package management tools: apt, apt-get and aptitude.