How To Install openms-doc on Kali Linux
Introduction
In this tutorial we learn how to install openms-doc
on Kali Linux.
What is openms-doc
openms-doc is:
OpenMS is a package for LC/MS data management and analysis. OpenMS offers an infrastructure for the development of mass spectrometry-related software and powerful 2D and 3D visualization solutions.
OpenMS offers analyses for various quantitation protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH??
It provides built-in algorithms for de-novo identification and database search, as well as adapters to other state-of-the art tools like X!Tandem, Mascot, OMSSA??
OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data and supports easy integration of tools into workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and a unified parameter handling.
This package brings full documentation for both the libopenms library package (libOpenMS and libOpenMS_GUI) and the OpenMS Proteomic Pipeline (topp) package.
There are three methods to install openms-doc
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install openms-doc Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install openms-doc
using apt-get
by running the following command:
sudo apt-get -y install openms-doc
Install openms-doc Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install openms-doc
using apt
by running the following command:
sudo apt -y install openms-doc
Install openms-doc Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install openms-doc
using aptitude
by running the following command:
sudo aptitude -y install openms-doc
How To Uninstall openms-doc on Kali Linux
To uninstall only the openms-doc
package we can use the following command:
sudo apt-get remove openms-doc
Uninstall openms-doc And Its Dependencies
To uninstall openms-doc
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove openms-doc
Remove openms-doc Configurations and Data
To remove openms-doc
configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge openms-doc
Remove openms-doc configuration, data, and all of its dependencies
We can use the following command to remove openms-doc
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge openms-doc
Dependencies
openms-doc have the following dependencies:
References
Summary
In this tutorial we learn how to install openms-doc
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.