How To Install lumpy-sv-examples on Kali Linux

Introduction

In this tutorial we learn how to install lumpy-sv-examples on Kali Linux.

What is lumpy-sv-examples

lumpy-sv-examples is:

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

This package contains some example data and scripts to test lumpy-sv.

There are three methods to install lumpy-sv-examples on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install lumpy-sv-examples Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install lumpy-sv-examples using apt-get by running the following command:

sudo apt-get -y install lumpy-sv-examples

Install lumpy-sv-examples Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install lumpy-sv-examples using apt by running the following command:

sudo apt -y install lumpy-sv-examples

Install lumpy-sv-examples Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install lumpy-sv-examples using aptitude by running the following command:

sudo aptitude -y install lumpy-sv-examples

How To Uninstall lumpy-sv-examples on Kali Linux

To uninstall only the lumpy-sv-examples package we can use the following command:

sudo apt-get remove lumpy-sv-examples

Uninstall lumpy-sv-examples And Its Dependencies

To uninstall lumpy-sv-examples and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove lumpy-sv-examples

Remove lumpy-sv-examples Configurations and Data

To remove lumpy-sv-examples configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge lumpy-sv-examples

Remove lumpy-sv-examples configuration, data, and all of its dependencies

We can use the following command to remove lumpy-sv-examples configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge lumpy-sv-examples

Dependencies

lumpy-sv-examples have the following dependencies:

References

• lumpy-sv-examples website

Summary

In this tutorial we learn how to install lumpy-sv-examples package on Kali Linux using different package management tools: apt, apt-get and aptitude.